Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs11713206 chr3:52999243 A/G 0.000184 118 42.9 23.8 25.63 KM Plot
THYM rs11713290 chr3:52971579 G/A 0.000223 119 42.9 23.75 25.63 KM Plot
THYM rs11713859 chr3:53042080 C/A 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs11714037 chr3:52971680 C/A 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs117151587 chr4:70099268 T/C 4.7E-13 119 41.77 35 6 KM Plot
THYM rs11715231 chr3:52942776 G/A 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs11717132 chr3:52990650 G/A 0.000238 118 44.38 23.75 25.63 KM Plot
THYM rs11717715 chr3:52975565 G/A 0.000223 119 42.9 23.75 25.63 KM Plot
THYM rs11718538 chr3:52975987 C/G 0.000223 119 42.9 23.75 25.63 KM Plot
THYM rs11718834 chr3:52963668 A/C 0.000223 119 42.9 23.75 25.63 KM Plot
THYM rs11720113 chr3:9854913 C/A 1.08E-6 119 36.4 53.63 25.83 KM Plot
THYM rs11720191 chr3:53013839 T/C 0.000283 117 42.9 23.75 25.63 KM Plot
THYM rs11721767 chr4:126085179 C/T 4.34E-5 119 38.13 31.35 48 KM Plot
THYM rs11725494 chr4:6293855 C/T 8.06E-7 119 25.83 38.83 50.1 KM Plot
THYM rs11725500 chr4:6293919 C/G 1.25E-6 119 25.83 38.58 50.13 KM Plot